Fix VPN Disconnects on Windows 11 After Intune Configuration: Step-by-Step Troubleshooting Guide


Fix VPN Disconnect Issues on Windows 11 After Intune Configuration

If your VPN keeps disconnecting after being deployed through Microsoft Intune, you’re not alone.
Many IT admins face this issue after setting up built-in Windows VPN profiles, Always On VPN, or third-party clients like Cisco AnyConnect or FortiClient.

This guide explains why it happens and how to fix it step by step.


🧭 Step 1: Identify the VPN Setup Type

First, figure out how the VPN was deployed through Intune.
Each method behaves differently, and the fix depends on it.

Deployment MethodWhere to Check
Built-in VPN profileIntune Admin Center → Devices → Configuration Profiles → VPN
Custom XML (OMA-URI / CSP)Configuration Profiles → Custom
Third-party VPN appDeployed as Win32 or store app
Always On VPNManaged via VPNv2 CSP profile or PowerShell script

👉 Why this matters: built-in VPNs handle reconnects differently than Always On VPN, and XML-based profiles often lose credentials after a reboot.


⚙️ Step 2: Review Key VPN Policy Settings in Intune

Go to Intune Admin Center → Devices → Configuration Profiles → [Your VPN Profile] → Settings
and check the following:

SettingRecommended
Connection TypeMatches your VPN (IKEv2, SSTP, L2TP, etc.)
Authentication MethodMatches VPN server (EAP, certificate, user credentials)
Split TunnelingDisable temporarily (test with full tunnel)
Remember CredentialsEnabled
Always On VPNUse only if certificates and device tunnel support it
Device TunnelUse for hybrid-joined devices only

A mismatch here can cause session drops or immediate disconnects.


🔐 Step 3: Validate Certificates and Authentication

If your VPN uses certificate-based authentication (SCEP, PKCS, or Cloud PKI), confirm the right certificate exists on the device.

  1. Open Settings → Privacy & Security → Certificates
  2. Check the Personal (User) or Computer (Device) store
  3. Verify expiry date and issuer

If missing, check Intune → Devices → [Device] → Managed Certificates to confirm successful delivery.

Tip:
Ensure the Trusted Root and SCEP profiles are deployed before the VPN profile. Without them, authentication fails and the tunnel drops after a few seconds.


🧩 Step 4: Check Event Viewer for VPN Logs

Press Win + X → Event Viewer → Applications and Services Logs → Microsoft → Windows → RasClient → Operational.

Look for these error codes:

Event IDMeaning
20226Disconnected – authentication failure
20227Connection attempt failed
20228VPN tunnel terminated unexpectedly

Most of these point to bad credentials, expired certificates, or wrong protocols.


🌐 Step 5: Verify Network and DNS

Sometimes the VPN connects but fails due to DNS or routing issues.

Run these commands in PowerShell or CMD:

ipconfig /all
route print

Confirm that:

  • The VPN interface shows a valid IP address.
  • DNS servers are reachable.
  • Internal routes are listed correctly.

If not, update the VPN profile in Intune → DNS Settings and Traffic Filters.


🧰 Step 6: Test a Manual VPN Connection

Create a temporary manual VPN:

  1. Settings → Network & Internet → VPN → Add VPN
  2. Enter the same server name, protocol, and auth method
  3. Connect manually

If it stays connected, the problem lies in your Intune profile (CSP mismatch, missing cert, or policy conflict).


🧠 Step 7: Check for Policy Conflicts

Hybrid devices often receive both Group Policy and MDM policy.
Use Device Diagnostics → Policy Conflicts in Intune to confirm only one policy controls your VPN settings.

If conflicts exist:

  • Disable overlapping GPOs.
  • Redeploy your Intune VPN profile.

🧩 Step 8: Fix Patterns Based on Symptoms

SymptomFix
Disconnects after 30–60 secCheck cert auth and EAP protocol
Drops when idleSet “Idle Timeout” = 0
Works on Wi-Fi onlyVerify split tunnel and firewall rules
Keeps reconnecting (Always On VPN)Reinstall root cert or disable Trusted Network Detection
Broke after Windows updateRemove and re-deploy the VPN profile

🔄 Step 9: Re-Sync and Export Logs

If all looks right but the VPN still disconnects:

  1. Open Intune Admin Center → Devices → [Device] → Sync
  2. Wait 10 minutes
  3. On the device, go to
    Settings → Accounts → Access Work or School → [Org Account] → Info → Export Logs

These logs help pinpoint which policy or certificate is failing.


✅ Summary

AreaCommon CauseFix
Policy conflictGPO vs MDMDisable GPO and re-deploy Intune VPN
Auth failureCertificate missing or expiredReissue certs via Intune SCEP/PKCS
DNS or routesIncorrect network rulesUpdate DNS settings in VPN profile
Idle timeoutsDefault session limitSet timeout to 0 (no limit)
Autopatch devicesTrusted Network Detection loopTemporarily disable Always On

💬 Final Thoughts

VPN disconnections after Intune deployment usually trace back to one of three issues:
bad authentication, missing certificates, or conflicting policies.

Once those are fixed, Windows 11’s built-in VPN and Always On VPN become very stable.
Start with verifying your telemetry, certificates, and profile alignment, and you’ll likely have your VPN connections running smoothly again.


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